Welcome to faltwerk!

Protein exploration without the pain; for more examples and information, visit the project repo. You’ve come here looking for details; should you find something missing, please open an issue. Thank you for using faltwerk.

Contents

• faltwerk Python API basics
  • Fold: basic structure manipulation and annotation
  • Complex: basic structure complex manipulation and annotation
  • Binding: map likely ligand binding sites to protein structure
• IO
  • is_gz_file()
  • load_bfactor_column()
  • load_conserved()
  • load_scores()
  • parse_hyphy()
  • read_pdb()
  • save_pdb()
• geometry
  • distance_to_closest_active_site()
  • distance_to_positions()
  • euclidean_distance()
  • get_alpha_carbon_atoms()
  • get_complex_interface()
  • get_coordinate()
  • get_foldseek_vae_states()
  • get_foldseek_vae_states_from_path()
  • get_interface()
  • is_close()
• stats

We also provide several (executable) jupyter notebooks that illustrate a range of use cases.